Welcome to FEDerated GENeral “Omics”(FEDGEN) Cloud HPC Datacenter User documentation!
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**About FEDerated GENeral “Omics” (FEDGEN)**
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The goal of the **FEDerated GENeral “Omics” (FEDGEN)** research project
is to develop ground-breaking research artefacts on federated cloud
computing, artificial intelligence and general “omics” for precision
medicine in Africa. The specific objectives are to address critical
issues in Africa on research capacity, large-scale research
infrastructure, early disease diagnosis, public health education, large
scale “omics” data storage/analysis and disease modelling.

We are continuously expanding our private High-Performance Computing
(HPC) infrastructure to implement the FEDGEN Datacenter and FEDGEN
Testbeds towards providing the required infrastructure for the stated
specific objectives. These infrastructures are revolutionising eHealth
research in Africa by providing robust platforms for storing and
analysing vast amounts of “omics” dataset that underlie malaria, breast
and prostate cancers. The cloud AI and advanced computing capabilities
enable real-time data processing, allowing researchers to gain rapid
insights into complex “omics” information and accelerate the discovery
of new treatments and therapies.

Check out our `website <http://www.fedgen.net>`_ for further information.

.. note::

   This project is under active development.


.. toctree::
   :caption: WELCOME

   welcome/About FEDGEN
   FEDGEN HPC Overview
   Dashboard
   others/Contact
   Acknowledgements


.. toctree::
   :caption: FEDGEN HPC RESOURCES

   fedgen_hpc_resources/FEDGEN HPC Layout
   fedgen_hpc_resources/Cluster resources
   fedgen_hpc_resources/GPU resources
   fedgen_hpc_resources/Storage



.. toctree::
   :maxdepth: 1
   :caption: GETTING STARTED

   access/Obtaining a FEDGEN HPC account
   access/Connect to the Cluster
   access/Working With An SSH Client
   access/Introduction to MobaXterm
   access/SSH connection via VS Code
   others/Linux command line
   others/Making your files safe
   others/Transferring files to and from the clusters
   
   

.. toctree::
   :caption: SCHEDULING JOBS

   job_scheduling/Resource Manager
   job_scheduling/SLURM Workload ManagerMAIN
   job_scheduling/Scheduling Jobs
   job_scheduling/Job script examples
   job_scheduling/Interactive jobs
   job_scheduling/Managing and Monitoring jobs
   job_scheduling/Going Parallel



.. toctree::
   :caption: APPLICATIONS

   others/Jupyter
   job_scheduling/Applications